Transcript: LINC00877:11

Basic information

LNCipedia transcript ID: LINC00877:11 
LNCipedia gene ID: LINC00877
Location (hg19): chr3:72084670-72149578
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2287 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000468646; ENST00000468646.1; RP11-398A8.3-001; OTTHUMT00000352207.1
Alternative gene names: ENSG00000241163; RP11-398A8.3; ENSG00000241163.1; OTTHUMG00000158784.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.5428 non-coding 
CPAT coding probability 8.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00877:11 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RYBP-3:6
3.1 lnc-RYBP-4:6
4.0 LINC00877:11
4.1 LINC00877:11
5.0 LINC00877:11
5.1 LINC00877:11
5.2 LINC00877:11