Transcript: LINC00877:5

Basic information

LNCipedia transcript ID: LINC00877:5 
LNCipedia gene ID: LINC00877
Location (hg19): chr3:72146407-72150109
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2034 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT090441
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.6302 non-coding 
CPAT coding probability 20.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00877:5 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RYBP-4:10
4.0 LINC00877:5
4.1 LINC00877:5
5.0 LINC00877:5
5.1 LINC00877:5
5.2 LINC00877:5