Transcript: LINC00877:6

Basic information

LNCipedia transcript ID: LINC00877:6 
HGNC Gene Symbol: LINC00877    
HGNC Full Gene Name: long intergenic non-protein coding RNA 877
Ensembl Gene ID: ENSG00000241163
Ensembl Transcript ID: ENST00000488545
Location (hg19): chr3:72146879-72150108
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1561 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000488545; ENST00000488545.1; RP11-398A8.3-004; OTTHUMT00000352210.1; NONHSAT090442
Alternative gene names: ENSG00000241163; RP11-398A8.3; ENSG00000241163.1; OTTHUMG00000158784.1; ENSG00000241163.3; LINC00877; ENSG00000241163.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.6302 non-coding 
CPAT coding probability 21.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00877:6 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RYBP-3:3
3.1 lnc-RYBP-4:3
4.0 LINC00877:6
4.1 LINC00877:6
5.0 LINC00877:6
5.1 LINC00877:6
5.2 LINC00877:6