Transcript: LINC00879:9

Basic information

LNCipedia transcript ID: LINC00879:9 
HGNC Gene Symbol: LINC00879    
HGNC Full Gene Name: long intergenic non-protein coding RNA 879
Ensembl Gene ID: ENSG00000239589
Ensembl Transcript ID: ENST00000466560
Location (hg19): chr3:94681774-94710087
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 777 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000466560; ENST00000466560.1; RP11-118N24.3-002; OTTHUMT00000352927.1; NONHSAT090742
Alternative gene names: ENSG00000239589; RP11-118N24.3; ENSG00000239589.1; OTTHUMG00000159021.2; LINC00879; ENSG00000239589.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -124.2078 non-coding 
CPAT coding probability 9.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00879:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NSUN3-1:5
3.1 lnc-NSUN3-1:5
4.0 LINC00879:9
4.1 LINC00879:9
5.0 LINC00879:9
5.1 LINC00879:9
5.2 LINC00879:9