Transcript: LINC00880:1

Basic information

LNCipedia transcript ID: LINC00880:1 
HGNC Gene Symbol: LINC00880    
HGNC Full Gene Name: long intergenic non-protein coding RNA 880
Ensembl Gene ID: ENSG00000243629
Ensembl Transcript ID: ENST00000471357
Location (hg19): chr3:156799456-156840793
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2018 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000471357; ENST00000471357.1; RP11-6F2.4-001; OTTHUMT00000351886.1; NONHSAT092877
Alternative gene names: ENSG00000243629; RP11-6F2.4; ENSG00000243629.1; OTTHUMG00000158717.1; LINC00880;

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.5314 non-coding 
CPAT coding probability 15.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00880:1 no no no no

Available literature

  1. Wu (2018), LncRNA LINC00880 promotes cell proliferation, migration, and invasion while inhibiting apoptosis by targeting CACNG5 through the MAPK signaling pathway in spinal cord ependymoma., J. Cell. Physiol.
  2. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCNL1-1:1
3.1 lnc-CCNL1-1:1
4.0 LINC00880:1
4.1 LINC00880:1
5.0 LINC00880:1
5.1 LINC00880:1
5.2 LINC00880:1