Transcript: LINC00881:6

Basic information

LNCipedia transcript ID: LINC00881:6 
LNCipedia gene ID: LINC00881
Location (hg19): chr3:156807670-156818923
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 790 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00005387
Alternative gene names: XLOC_002892; linc-PTX3-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.8076 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00881:6 no no no no

Available literature

  1. Li (2015), Comparative transcriptomic analysis of multiple cardiovascular fates from embryonic stem cells predicts novel regulators in human cardiogenesis., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LEKR1-2:4
3.1 lnc-LEKR1-2:4
4.0 LINC00881:6
4.1 LINC00881:6
5.0 LINC00881:6
5.1 LINC00881:6
5.2 LINC00881:6