Transcript: LINC00882:2

Basic information

LNCipedia transcript ID: LINC00882:2 
HGNC Gene Symbol: LINC00882    
HGNC Full Gene Name: long intergenic non-protein coding RNA 882
Ensembl Gene ID: ENSG00000242759
Ensembl Transcript ID: ENST00000473636
Location (hg19): chr3:106830713-106959488
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 710 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005804; ENST00000473636; ENST00000473636.1; RP11-280F2.2-002; OTTHUMT00000353789.1; NONHSAT091025
Alternative gene names: XLOC_003204; linc-CBLB-6; ENSG00000242759; RP11-280F2.2; ENSG00000242759.1; OTTHUMG00000159196.1; ENSG00000242759.2; LINC00882; ENSG00000242759.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.606 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00882:2 no no no no

Available literature

  1. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD47-4:1
3.1 lnc-CBLB-7:1
4.0 LINC00882:2
4.1 LINC00882:2
5.0 LINC00882:2
5.1 LINC00882:2
5.2 LINC00882:2