Transcript: LINC00882:31

Basic information

LNCipedia transcript ID: LINC00882:31 
LNCipedia gene ID: LINC00882
Location (hg19): chr3:106529509-106530486
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 579 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00007222; NONHSAT090996
Alternative gene names: XLOC_003202; linc-CBLB-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -194.1512 non-coding 
CPAT coding probability 13.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00882:31 no no no no

Available literature

  1. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD47-4:19
3.1 lnc-CBLB-7:19
4.0 LINC00882:31
4.1 LINC00882:31
5.0 LINC00882:31
5.1 LINC00882:31
5.2 LINC00882:31