Transcript: LINC00882:38

Basic information

LNCipedia transcript ID: LINC00882:38 
LNCipedia gene ID: LINC00882
Ensembl Gene ID: ENSG00000239828
Ensembl Transcript ID: ENST00000595232
Location (hg19): chr3:106991514-107140151
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 582 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000595232.2
Alternative gene names: ENSG00000239828.6; RP11-446H18.5; ; AC063944.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -166.8081 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00882:38 no no no no

Available literature

  1. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CD47-3:13
4.1 LINC00882:38
5.0 LINC00882:38
5.1 LINC00882:38
5.2 LINC00882:38