Transcript: LINC00882:43

Basic information

LNCipedia transcript ID: LINC00882:43 
LNCipedia gene ID: LINC00882
RefSeq ID: NR_126332
Location (hg19): chr3:107099323-107101006
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 470 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_126332; NR_126332.1
Alternative gene names: ; LOC101929579


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -166.8081 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00882:43 no no no no

Available literature

  1. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CD47-3:12
4.0 lnc-CD47-3:12
4.1 LINC00882:43
5.0 LINC00882:43
5.1 LINC00882:43
5.2 LINC00882:43