Transcript: LINC00882:6

Basic information

LNCipedia transcript ID: LINC00882:6 
HGNC Gene Symbol: LINC00882    
HGNC Full Gene Name: long intergenic non-protein coding RNA 882
Ensembl Gene ID: ENSG00000242759
Ensembl Transcript ID: ENST00000484698
Location (hg19): chr3:106555658-106959479
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2718 bp
Exons: 8
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000484698; ENST00000484698.1; RP11-280F2.2-001; OTTHUMT00000353788.1; NONHSAT091001; ENST00000484698.5
Alternative gene names: ENSG00000242759; RP11-280F2.2; ENSG00000242759.1; OTTHUMG00000159196.1; ENSG00000242759.2; LINC00882; ENSG00000242759.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.4106 non-coding 
CPAT coding probability 2.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00882:6 no no no no

Available literature

  1. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD47-4:4
3.1 lnc-CBLB-7:4
4.0 LINC00882:6
4.1 LINC00882:6
5.0 LINC00882:6
5.1 LINC00882:6
5.2 LINC00882:6