Transcript: LINC00887:4

Basic information

LNCipedia transcript ID: LINC00887:4 
HGNC Gene Symbol: LINC00887    
HGNC Full Gene Name: long intergenic non-protein coding RNA 887
Ensembl Gene ID: ENSG00000214145
Ensembl Transcript ID: ENST00000429578
Location (hg19): chr3:194017424-194030592
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1717 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429578; ENST00000429578.1; RP11-513G11.1-002; OTTHUMT00000342628.1; ENST00000429578.5
Alternative gene names: ENSG00000214145; RP11-513G11.1; ENSG00000214145.2; OTTHUMG00000155982.1; LINC00887; ENSG00000214145.6; linc-ATP13A4-8; HEIRCC


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.1768 non-coding 
CPAT coding probability 9.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00887:4 no no no no

Available literature

  1. Xiong (2017), High expression of the long non-coding RNA HEIRCC promotes Renal Cell Carcinoma metastasis by inducing epithelial-mesenchymal transition., Oncotarget
  2. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics
  3. Lin (2015), The long noncoding RNA landscape in hypoxic and inflammatory renal epithelial injury., Am. J. Physiol. Renal Physiol.
  4. Yu (2012), LncRNAs expression signatures of renal clear cell carcinoma revealed by microarray., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CPN2-1:3
3.1 lnc-CPN2-1:3
4.0 LINC00887:4
4.1 LINC00887:4
5.0 LINC00887:4
5.1 LINC00887:4
5.2 LINC00887:4