Transcript: LINC00894:3

Basic information

LNCipedia transcript ID: LINC00894:3 
LNCipedia gene ID: LINC00894
RefSeq ID: NR_027456
Location (hg19): chrX:149106766-149185018
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3182 bp
Exons: 12
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT138957; NR_027456; NR_027456.1
Alternative gene names: ; LINC00894


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.2025 non-coding 
CPAT coding probability 2.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00894:3 no no no no

Available literature

  1. Zhang (2018), Downregulation of LINC00894-002 Contributes to Tamoxifen Resistance by Enhancing the TGF-β Signaling Pathway., Biochemistry Mosc.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAGEA8-2:13
4.0 LINC00894:3
4.1 LINC00894:3
5.0 LINC00894:3
5.1 LINC00894:3
5.2 LINC00894:3