Transcript: LINC00901:2

Basic information

LNCipedia transcript ID: LINC00901:2 
LNCipedia gene ID: LINC00901
Location (hg19): chr3:116640278-116651082
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1449 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00005428
Alternative gene names: XLOC_002769; linc-C3orf30-7; TCONS_00005428; BC040587


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.7274 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00901:2 yes no no no

Available literature

  1. Chi (2014), Role of BC040587 as a predictor of poor outcome in breast cancer., Cancer Cell Int.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GAP43-5:2
3.1 lnc-GAP43-8:3
4.0 LINC00901:2
4.1 LINC00901:2
5.0 LINC00901:2
5.1 LINC00901:2
5.2 LINC00901:2