Transcript: LINC00909:2

Basic information

LNCipedia transcript ID: LINC00909:2 
LNCipedia gene ID: LINC00909
Location (hg19): chr18:72262130-72265162
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3033 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA652:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.1784 non-coding 
CPAT coding probability 5.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00909:2 yes no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00909:2
4.1 LINC00909:2
5.0 LINC00909:2
5.1 LINC00909:2
5.2 LINC00909:2