Transcript: LINC00923:10

Basic information

LNCipedia transcript ID: LINC00923:10 
LNCipedia gene ID: LINC00923
Location (hg19): chr15:98208535-98213519
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 465 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023823; NONHSAT050743
Alternative gene names: XLOC_011602; linc-RGMA-5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.3352 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00923:10 no no no no

Available literature

  1. Parsa (2017), Genome-Wide Association of CKD Progression: The Chronic Renal Insufficiency Cohort Study., J. Am. Soc. Nephrol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-82I10.1.1-2:1
3.1 lnc-RP11-82I10.1.1-2:1
4.0 LINC00923:10
4.1 LINC00923:10
5.0 LINC00923:10
5.1 LINC00923:10
5.2 LINC00923:10