Transcript: LINC00924:9

Basic information

LNCipedia transcript ID: LINC00924:9 
HGNC Gene Symbol: LINC00924    
HGNC Full Gene Name: long intergenic non-protein coding RNA 924
Ensembl Gene ID: ENSG00000259134
Ensembl Transcript ID: ENST00000554837
Location (hg19): chr15:95976324-96049343
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 862 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554837; ENST00000554837.1; RP11-398J10.1-002; OTTHUMT00000415216.1; ENST00000554837.5
Alternative gene names: ENSG00000259134; RP11-398J10.1; ENSG00000259134.1; OTTHUMG00000171819.1; LINC00924; ENSG00000259134.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.4518 non-coding 
CPAT coding probability 17.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00924:9 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NR2F2-4:6
3.1 lnc-NR2F2-8:6
4.0 LINC00924:9
4.1 LINC00924:9
5.0 LINC00924:9
5.1 LINC00924:9
5.2 LINC00924:9