Transcript: LINC00944:23

Basic information

LNCipedia transcript ID: LINC00944:23 
HGNC Gene Symbol: LINC00944    
HGNC Full Gene Name: long intergenic non-protein coding RNA 944
Ensembl Gene ID: ENSG00000256128
Ensembl Transcript ID: ENST00000544499
Location (hg19): chr12:127216842-127219944
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 366 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000544499; ENST00000544499.1; RP11-173C20.2-006; OTTHUMT00000399871.1; NONHSAT031820
Alternative gene names: ENSG00000256128; RP11-173C20.2; ENSG00000256128.1; OTTHUMG00000168480.1; LINC00944; ENSG00000256128.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.9507 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00944:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DHX37-10:19
3.1 lnc-DHX37-10:19
4.0 LINC00944:23
4.1 LINC00944:23
5.0 LINC00944:23
5.1 LINC00944:23
5.2 LINC00944:23