Transcript: LINC00951:3

Basic information

LNCipedia transcript ID: LINC00951:3 
LNCipedia gene ID: LINC00951
RefSeq ID: NR_038887
Location (hg19): chr6:40312084-40323745
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3122 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011215; NONHSAT112465; NR_038887; NR_038887.1
Alternative gene names: XLOC_005712; linc-MOCS1-3; lincRNA-uc003opf.1; FLJ41649; LINC00951


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.0407 non-coding 
CPAT coding probability 83.22% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00951:3 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE
  2. Wu (2013), A genetic polymorphism in lincRNA-uc003opf.1 is associated with susceptibility to esophageal squamous cell carcinoma in Chinese populations., Carcinogenesis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRFN2-2:1
3.1 lnc-LRFN2-2:1
4.0 LINC00951:3
4.1 LINC00951:3
5.0 LINC00951:3
5.1 LINC00951:3
5.2 LINC00951:3