Transcript: LINC00951:5

Basic information

LNCipedia transcript ID: LINC00951:5 
LNCipedia gene ID: LINC00951
Location (hg19): chr6:40312218-40314237
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 766 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT112467
Alternative gene names: lincRNA-uc003opf.1; FLJ41649


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.6036 non-coding 
CPAT coding probability 2.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00951:5 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE
  2. Wu (2013), A genetic polymorphism in lincRNA-uc003opf.1 is associated with susceptibility to esophageal squamous cell carcinoma in Chinese populations., Carcinogenesis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRFN2-2:6
4.0 LINC00951:5
4.1 LINC00951:5
5.0 LINC00951:5
5.1 LINC00951:5
5.2 LINC00951:5