Transcript: LINC00954:5

Basic information

LNCipedia transcript ID: LINC00954:5 
HGNC Gene Symbol: LINC00954    
HGNC Full Gene Name: long intergenic non-protein coding RNA 954
Ensembl Gene ID: ENSG00000228784
Ensembl Transcript ID: ENST00000449086
Location (hg19): chr2:20068635-20084808
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2995 bp
Exons: 10
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000449086; ENST00000449086.1; AC013400.2-001; OTTHUMT00000323862.1; ENST00000449086.5
Alternative gene names: ENSG00000228784; AC013400.2; ENSG00000228784.1; OTTHUMG00000151773.1; ENSG00000228784.3; LINC00954; ENSG00000228784.7; FLJ12334


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.8811 non-coding 
CPAT coding probability 4.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00954:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RHOB-2:4
3.1 lnc-RHOB-4:4
4.0 LINC00954:5
4.1 LINC00954:5
5.0 LINC00954:5
5.1 LINC00954:5
5.2 LINC00954:5