Transcript: LINC00960:5

Basic information

LNCipedia transcript ID: LINC00960:5 
HGNC Gene Symbol: LINC00960    
HGNC Full Gene Name: long intergenic non-protein coding RNA 960
Ensembl Gene ID: ENSG00000242516
Ensembl Transcript ID: ENST00000492922
Location (hg19): chr3:75723564-75725776
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2126 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000492922; ENST00000492922.1; RP11-413E6.8-002; OTTHUMT00000352692.1; NONHSAT090549
Alternative gene names: ENSG00000242516; RP11-413E6.8; ENSG00000242516.1; OTTHUMG00000158961.1; LINC00960;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 30.0119 non-coding 
CPAT coding probability 3.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00960:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FRG2C-1:2
3.1 lnc-FRG2C-1:2
4.0 LINC00960:5
4.1 LINC00960:5
5.0 LINC00960:5
5.1 LINC00960:5
5.2 LINC00960:5