Transcript: LINC00964:11

Basic information

LNCipedia transcript ID: LINC00964:11 
LNCipedia gene ID: LINC00964
RefSeq ID: NR_027321
Location (hg19): chr8:125954250-125963337
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3579 bp
Exons: 4
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00014468; NONHSAT128926; NR_027321; NR_027321.1
Alternative gene names: XLOC_006916; linc-ZNF572; ; LINC00964


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.857 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00964:11 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF572-1:11
3.1 lnc-ZNF572-1:11
4.0 LINC00964:11
4.1 LINC00964:11
5.0 LINC00964:11
5.1 LINC00964:11
5.2 LINC00964:11