Transcript: LINC00971:2

Basic information

LNCipedia transcript ID: LINC00971:2 
HGNC Gene Symbol: LINC00971    
HGNC Full Gene Name: long intergenic non-protein coding RNA 971
Ensembl Gene ID: ENSG00000242641
Ensembl Transcript ID: ENST00000482721
Location (hg19): chr3:84851600-84918779
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 535 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000482721.1; RP11-735B13.1-002; OTTHUMT00000352777.1; NONHSAT090651; ENST00000482721.5
Alternative gene names: ENSG00000242641.1; RP11-735B13.1; OTTHUMG00000158981.2; LINC00971; ENSG00000242641.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.707 non-coding 
CPAT coding probability 3.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00971:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VGLL3-6:2
4.0 LINC00971:2
4.1 LINC00971:2
5.0 LINC00971:2
5.1 LINC00971:2
5.2 LINC00971:2