Transcript: LINC00973:2

Basic information

LNCipedia transcript ID: LINC00973:2 
HGNC Gene Symbol: LINC00973    
HGNC Full Gene Name: long intergenic non-protein coding RNA 973
Ensembl Gene ID: ENSG00000240476
Ensembl Transcript ID: ENST00000473756
Location (hg19): chr3:98699902-98701940
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 962 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005559; ENST00000473756; ENST00000473756.1; CTD-2021J15.2-001; OTTHUMT00000353102.1; NONHSAT090835
Alternative gene names: XLOC_002736; linc-COL8A1-3; ENSG00000240476; CTD-2021J15.2; ENSG00000240476.1; OTTHUMG00000159060.1; LINC00973


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.6156 non-coding 
CPAT coding probability 1.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00973:2 no no no no

Available literature

  1. Zinovieva (2018), Expression of long non-coding RNA LINC00973 is consistently increased upon treatment of colon cancer cells with different chemotherapeutic drugs., Biochimie
  2. Diao (2017), Risk score based on ten lncRNA-mRNA expression predicts the survival of stage II-III colorectal carcinoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ST3GAL6-2:1
3.1 lnc-ST3GAL6-2:1
4.0 LINC00973:2
4.1 LINC00973:2
5.0 LINC00973:2
5.1 LINC00973:2
5.2 LINC00973:2