Transcript: LINC00973:6

Basic information

LNCipedia transcript ID: LINC00973:6 
LNCipedia gene ID: LINC00973
Location (hg19): chr3:98680771-98717691
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1361 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000240476.1|ENCT00000291490.1
Alternative gene names: CTD-2021J15.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -6.7926 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00973:6 no no no no

Available literature

  1. Zinovieva (2018), Expression of long non-coding RNA LINC00973 is consistently increased upon treatment of colon cancer cells with different chemotherapeutic drugs., Biochimie
  2. Diao (2017), Risk score based on ten lncRNA-mRNA expression predicts the survival of stage II-III colorectal carcinoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00973:6
5.0 LINC00973:6
5.1 LINC00973:6
5.2 LINC00973:6