Transcript: LINC00982:17

Basic information

LNCipedia transcript ID: LINC00982:17 
LNCipedia gene ID: LINC00982
Location (hg19): chr1:2972003-2987053
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 7023 bp
Exons: 8
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000177133.6|MICT00000001501.1
Alternative gene names: FLJ42875


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -21.8407 non-coding 
CPAT coding probability 50.09% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00982:17 yes no no no

Available literature

  1. Fei (2016), Upregulated expression of long non-coding RNA LINC00982 regulates cell proliferation and its clinical relevance in patients with gastric cancer., Tumour Biol.
  2. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics
  3. Gudenas (2015), Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability., Bioinform Biol Insights
  4. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00982:17
5.0 LINC00982:17
5.1 LINC00982:17
5.2 LINC00982:17