Transcript: LINC00994:1

Basic information

LNCipedia transcript ID: LINC00994:1 
HGNC Gene Symbol: LINC00994    
HGNC Full Gene Name: long intergenic non-protein coding RNA 994
Ensembl Gene ID: ENSG00000189196
Ensembl Transcript ID: ENST00000485805
RefSeq ID: NR_033978
Location (hg19): chr3:64064037-64073039
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2129 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00005397; ENST00000485805; ENST00000485805.1; RP11-129B22.2-001; OTTHUMT00000352220.1; NONHSAT090229; NR_033978; NR_033978.1
Alternative gene names: XLOC_003145; linc-PSMD6; ENSG00000189196; RP11-129B22.2; ENSG00000189196.4; OTTHUMG00000158790.1; LINC00994;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.7524 non-coding 
CPAT coding probability 4.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00994:1 no no no no

Available literature

  1. Li (2015), Increased New lncRNA-mRNA Gene Pair Levels in Human Cumulus Cells Correlate With Oocyte Maturation and Embryo Development., Reprod Sci


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRICKLE2-2:1
3.1 lnc-PRICKLE2-2:1
4.0 LINC00994:1
4.1 LINC00994:1
5.0 LINC00994:1
5.1 LINC00994:1
5.2 LINC00994:1