Transcript: LINC01005:2

Basic information

LNCipedia transcript ID: LINC01005:2 
HGNC Gene Symbol: LINC01005    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1005
Ensembl Gene ID: ENSG00000228564
Ensembl Transcript ID: ENST00000451440
Location (hg19): chr7:63488443-63490483
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 531 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013182; ENST00000451440.1; RP11-3N2.3-002; OTTHUMT00000344313.1; NONHSAT120971
Alternative gene names: XLOC_006468; linc-ZNF479-7; ENSG00000228564.1; RP11-3N2.3; OTTHUMG00000156482.1; LINC01005;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.0137 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01005:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF680-3:1
3.1 lnc-ZNF680-3:1
4.0 LINC01005:2
4.1 LINC01005:2
5.0 LINC01005:2
5.1 LINC01005:2
5.2 LINC01005:2