Transcript: LINC01006:10

Basic information

LNCipedia transcript ID: LINC01006:10 
LNCipedia gene ID: LINC01006
Location (hg19): chr7:156376854-156398076
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 683 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000414767; ENST00000414767.1; RP5-982E9.1-001; OTTHUMT00000347785.1; NONHSAT124420
Alternative gene names: ENSG00000241558; RP5-982E9.1; ENSG00000241558.1; OTTHUMG00000157178.1; MY040


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.5155 non-coding 
CPAT coding probability 2.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01006:10 no no no no

Available literature

  1. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C7orf13-1:3
3.1 lnc-LMBR1-2:7
4.0 LINC01006:10
4.1 LINC01006:10
5.0 LINC01006:10
5.1 LINC01006:10
5.2 LINC01006:10