Transcript: LINC01006:3

Basic information

LNCipedia transcript ID: LINC01006:3 
HGNC Gene Symbol: LINC01006    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1006
Ensembl Gene ID: ENSG00000182648
Ensembl Transcript ID: ENST00000624071
Location (hg19): chr7:156432698-156433348
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 651 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000624071.1
Alternative gene names: ENSG00000182648.11; LINC01006; MY040


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -17.7152 non-coding 
CPAT coding probability 94.87% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01006:3 no no no no

Available literature

  1. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01006:3
4.1 LINC01006:3
5.0 LINC01006:3
5.1 LINC01006:3
5.2 LINC01006:3