Transcript: LINC01007:2

Basic information

LNCipedia transcript ID: LINC01007:2 
LNCipedia gene ID: LINC01007
Location (hg19): chr7:101208589-101212286
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1482 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00012921
Alternative gene names: XLOC_006548; linc-RABL5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.0944 non-coding 
CPAT coding probability 4.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01007:2 no no no no

Available literature

  1. Gudenas (2015), Gene Coexpression Networks in Human Brain Developmental Transcriptomes Implicate the Association of Long Noncoding RNAs with Intellectual Disability., Bioinform Biol Insights


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYL10-1:1
3.1 lnc-MYL10-1:1
4.0 LINC01007:2
4.1 LINC01007:2
5.0 LINC01007:2
5.1 LINC01007:2
5.2 LINC01007:2