Transcript: LINC01010:4

Basic information

LNCipedia transcript ID: LINC01010:4 
LNCipedia gene ID: LINC01010
RefSeq ID: NR_038219
Location (hg19): chr6:134759528-134825158
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1687 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT115032; NR_038219; NR_038219.1
Alternative gene names: ; LINC01010


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.047 non-coding 
CPAT coding probability 8.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01010:4 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TBPL1-1:6
4.0 LINC01010:4
4.1 LINC01010:4
5.0 LINC01010:4
5.1 LINC01010:4
5.2 LINC01010:4