Transcript: LINC01015:4

Basic information

LNCipedia transcript ID: LINC01015:4 
LNCipedia gene ID: LINC01015
Location (hg19): chr6:29497197-29501345
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2777 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000434657.1; DAQB-12N14.5-001; OTTHUMT00000140988.1
Alternative gene names: ENSG00000224582.1; DAQB-12N14.5; OTTHUMG00000065812.2; LINC01015;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.0755 non-coding 
CPAT coding probability 2.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01015:4 no no no no

Available literature

  1. Ha (2014), A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements., BMC Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR2H2-2:1
4.0 LINC01015:4
4.1 LINC01015:4
5.0 LINC01015:4
5.1 LINC01015:4
5.2 LINC01015:4