Transcript: LINC01015:6

Basic information

LNCipedia transcript ID: LINC01015:6 
HGNC Gene Symbol: LINC01015    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1015
Ensembl Gene ID: ENSG00000224582
Ensembl Transcript ID: ENST00000445296
Location (hg19): chr6:29497253-29499934
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 399 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000445296.1; DAQB-12N14.5-002; OTTHUMT00000194569.1
Alternative gene names: ENSG00000224582.1; DAQB-12N14.5; OTTHUMG00000065812.2; LINC01015; ENSG00000224582.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.5005 non-coding 
CPAT coding probability 3.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01015:6 no no no no

Available literature

  1. Ha (2014), A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements., BMC Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR2H2-2:2
4.0 LINC01015:6
4.1 LINC01015:6
5.0 LINC01015:6
5.1 LINC01015:6
5.2 LINC01015:6