Transcript: LINC01016:2

Basic information

LNCipedia transcript ID: LINC01016:2 
HGNC Gene Symbol: LINC01016    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1016
Ensembl Gene ID: ENSG00000249346
Ensembl Transcript ID: ENST00000533304
Location (hg19): chr6:33860087-33864691
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 592 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533304; ENST00000533304.1; RP3-468B3.3-005; OTTHUMT00000389707.1; NONHSAT109931
Alternative gene names: ENSG00000249346; RP3-468B3.3; ENSG00000249346.2; OTTHUMG00000166297.4; LINC01016; ENSG00000249346.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -254.4951 non-coding 
CPAT coding probability 6.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01016:2 no no no no

Available literature

  1. Lin (2016), Primate-specific oestrogen-responsive long non-coding RNAs regulate proliferation and viability of human breast cancer cells., Open Biol
  2. Miano (2016), Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer., Oncotarget
  3. Jonsson (2015), Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer., Mol. Endocrinol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MLN-1:1
3.1 lnc-MLN-1:1
4.0 LINC01016:2
4.1 LINC01016:2
5.0 LINC01016:2
5.1 LINC01016:2
5.2 LINC01016:2