Transcript: LINC01016:3
Basic information
LNCipedia transcript ID: LINC01016:3
HGNC Gene Symbol: LINC01016
HGNC Full Gene Name:
long intergenic non-protein coding RNA 1016
Ensembl Gene ID:
ENSG00000249346
Ensembl Transcript ID:
ENST00000506222
RefSeq ID:
NR_038989
Location (hg19): chr6:33857288-33864684
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3151 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000506222; ENST00000506222.2; RP3-468B3.3-001; OTTHUMT00000389017.3; NONHSAT109849; NR_038989; ENST00000506222.6; NR_038989.1
Alternative gene names: ENSG00000249346; RP3-468B3.3; ENSG00000249346.2; OTTHUMG00000166297.4; LINC01016; ENSG00000249346.6;
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| LINC01016:3 | no | no | no | no |
Available literature
- Lin (2016), Primate-specific oestrogen-responsive long non-coding RNAs regulate proliferation and viability of human breast cancer cells., Open Biol
- Miano (2016), Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer., Oncotarget
- Jonsson (2015), Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer., Mol. Endocrinol.
LNCipedia transcript ID history
| LNCipedia version | LNCipedia transcript ID |
|---|---|
| 1.3 | lnc-MLN-1:2 |
| 3.1 | lnc-MLN-1:2 |
| 4.0 | LINC01016:3 |
| 4.1 | LINC01016:3 |
| 5.0 | LINC01016:3 |
| 5.1 | LINC01016:3 |
| 5.2 | LINC01016:3 |