Transcript: LINC01016:5

Basic information

LNCipedia transcript ID: LINC01016:5 
LNCipedia gene ID: LINC01016
Location (hg19): chr6:33857867-33861658
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3548 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012148; NONHSAT109861
Alternative gene names: XLOC_005689; linc-MLN;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.3387 non-coding 
CPAT coding probability 29.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01016:5 no no no no

Available literature

  1. Lin (2016), Primate-specific oestrogen-responsive long non-coding RNAs regulate proliferation and viability of human breast cancer cells., Open Biol
  2. Miano (2016), Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer., Oncotarget
  3. Jonsson (2015), Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer., Mol. Endocrinol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MLN-1:4
3.1 lnc-MLN-1:4
4.0 LINC01016:5
4.1 LINC01016:5
5.0 LINC01016:5
5.1 LINC01016:5
5.2 LINC01016:5