Transcript: LINC01018:3

Basic information

LNCipedia transcript ID: LINC01018:3 
HGNC Gene Symbol: LINC01018    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1018
Ensembl Gene ID: ENSG00000250056
Ensembl Transcript ID: ENST00000505626
Location (hg19): chr5:6582251-6588612
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3036 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505626; ENST00000505626.1; CTD-2195M18.1-001; OTTHUMT00000365709.1; NONHSAT100200; ENST00000505626.5
Alternative gene names: ENSG00000250056; CTD-2195M18.1; ENSG00000250056.1; OTTHUMG00000161680.1; LINC01018; ENSG00000250056.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.6817 non-coding 
CPAT coding probability 13.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01018:3 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SRD5A1-1:2
3.1 lnc-SRD5A1-1:2
4.0 LINC01018:3
4.1 LINC01018:3
5.0 LINC01018:3
5.1 LINC01018:3
5.2 LINC01018:3