Transcript: LINC01020:11

Basic information

LNCipedia transcript ID: LINC01020:11 
HGNC Gene Symbol: LINC01020    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1020
Ensembl Gene ID: ENSG00000215231
Ensembl Transcript ID: ENST00000514474
Location (hg19): chr5:5057844-5067442
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 643 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009338; ENST00000514474; ENST00000514474.1; CTD-2247C11.3-004; OTTHUMT00000365652.1; NONHSAT100161
Alternative gene names: XLOC_004269; linc-ADAMTS16-1; ENSG00000215231; CTD-2247C11.3; ENSG00000215231.3; OTTHUMG00000161653.2; LINC01020; ENSG00000215231.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.939 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01020:11 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADAMTS16-1:9
3.1 lnc-ADAMTS16-1:9
4.0 LINC01020:11
4.1 LINC01020:11
5.0 LINC01020:11
5.1 LINC01020:11
5.2 LINC01020:11