Transcript: LINC01020:2

Basic information

LNCipedia transcript ID: LINC01020:2 
LNCipedia gene ID: LINC01020
Location (hg19): chr5:5034472-5070109
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1792 bp
Exons: 8
Sources: Broad Institute
Alternative transcript names: TCONS_00009233
Alternative gene names: XLOC_004269; linc-ADAMTS16-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.5146 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01020:2 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADAMTS16-1:1
3.1 lnc-ADAMTS16-1:2
4.0 LINC01020:2
4.1 LINC01020:2
5.0 LINC01020:2
5.1 LINC01020:2
5.2 LINC01020:2