Transcript: LINC01028:3

Basic information

LNCipedia transcript ID: LINC01028:3 
LNCipedia gene ID: LINC01028
Location (hg19): chr17:68047418-68064235
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1044 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute
Alternative transcript names: ENST00000514386; TCONS_00025127
Alternative gene names: ENSG00000250216; XLOC_012296; linc-KCNJ16-1; TCONS_00025127


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -154.4151 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01028:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNJ16-1:1
3.1 lnc-KCNJ16-1:1
4.0 LINC01028:3
4.1 LINC01028:3
5.0 LINC01028:3
5.1 LINC01028:3
5.2 LINC01028:3