Transcript: LINC01040:1

Basic information

LNCipedia transcript ID: LINC01040:1 
HGNC Gene Symbol: LINC01040    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1040
Ensembl Gene ID: ENSG00000226037
Ensembl Transcript ID: ENST00000425048
Location (hg19): chr13:90129862-90152763
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 666 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021682; ENST00000425048; ENST00000425048.1; RP11-114G1.2-001; OTTHUMT00000045428.1; NONHSAT034629
Alternative gene names: XLOC_010685; linc-SLITRK6-2; ENSG00000226037; RP11-114G1.2; ENSG00000226037.1; OTTHUMG00000017177.1; LINC01040; TCONS_00021682


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -212.0382 non-coding 
CPAT coding probability 9.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01040:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK6-11:1
3.1 lnc-SLITRK6-11:1
4.0 LINC01040:1
4.1 LINC01040:1
5.0 LINC01040:1
5.1 LINC01040:1
5.2 LINC01040:1