Transcript: LINC01047:1

Basic information

LNCipedia transcript ID: LINC01047:1 
LNCipedia gene ID: LINC01047
Location (hg19): chr13:89867101-89889144
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 778 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00021680; ENST00000415193; ENST00000415193.1; RP11-143O10.1-001; OTTHUMT00000045423.1; NONHSAT034622
Alternative gene names: XLOC_010684; linc-SLITRK6-3; ENSG00000232225; RP11-143O10.1; ENSG00000232225.1; OTTHUMG00000017173.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.059 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01047:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK6-10:1
3.1 lnc-SLITRK6-10:1
4.0 LINC01047:1
4.1 LINC01047:1
5.0 LINC01047:1
5.1 LINC01047:1
5.2 LINC01047:1