Transcript: LINC01053:2

Basic information

LNCipedia transcript ID: LINC01053:2 
HGNC Gene Symbol: LINC01053    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1053
Ensembl Gene ID: ENSG00000238169
Ensembl Transcript ID: ENST00000457628
Location (hg19): chr13:25755579-25763898
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 771 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021531; ENST00000457628.1; RP11-165I9.8-001; OTTHUMT00000044224.1; NONHSAT032584
Alternative gene names: XLOC_010320; linc-NUPL1-1; ENSG00000238169.1; RP11-165I9.8; OTTHUMG00000016605.1; LINC01053;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.8281 non-coding 
CPAT coding probability 1.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01053:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PABPC3-2:1
3.1 lnc-PABPC3-2:1
4.0 LINC01053:2
4.1 LINC01053:2
5.0 LINC01053:2
5.1 LINC01053:2
5.2 LINC01053:2