Transcript: LINC01055:4

Basic information

LNCipedia transcript ID: LINC01055:4 
LNCipedia gene ID: LINC01055
Location (hg19): chr13:46255225-46256554
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 520 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00021645; ENST00000435067.1; RP11-154C3.2-001; OTTHUMT00000044784.1; NONHSAT033617
Alternative gene names: XLOC_010594; linc-FAM194B; ENSG00000235366.1; RP11-154C3.2; OTTHUMG00000016859.1; LINC01055;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.8981 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01055:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM194B-1:1
3.1 lnc-FAM194B-1:1
4.0 LINC01055:4
4.1 LINC01055:4
5.0 LINC01055:4
5.1 LINC01055:4
5.2 LINC01055:4