Transcript: LINC01060:1

Basic information

LNCipedia transcript ID: LINC01060:1 
HGNC Gene Symbol: LINC01060    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1060
Ensembl Gene ID: ENSG00000249378
Ensembl Transcript ID: ENST00000513313
Location (hg19): chr4:189321890-189407019
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 382 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000513313; TCONS_00007699; ENST00000513313.1; RP11-219G10.3-003; OTTHUMT00000359898.1; NONHSAT099741; ENST00000513313.5
Alternative gene names: ENSG00000249378; XLOC_003834; linc-FRG1-10; RP11-219G10.3; ENSG00000249378.1; OTTHUMG00000160242.4; LINC01060; ENSG00000249378.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -227.9987 non-coding 
CPAT coding probability 11.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01060:1 no no no no

Available literature

  1. Shi (2018), Loss of Linc01060 induces pancreatic cancer progression through vinculin-mediated focal adhesion turnover., Cancer Lett.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRIML1-3:1
3.1 lnc-TRIML1-3:1
4.0 LINC01060:1
4.1 LINC01060:1
5.0 LINC01060:1
5.1 LINC01060:1
5.2 LINC01060:1