Transcript: LINC01074:1

Basic information

LNCipedia transcript ID: LINC01074:1 
HGNC Gene Symbol: LINC01074    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1074
Ensembl Gene ID: ENSG00000227611
Ensembl Transcript ID: ENST00000422527
Location (hg19): chr13:62895438-62896531
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 555 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021560; ENST00000422527; ENST00000422527.1; RP11-168G22.3-001; OTTHUMT00000045188.1; NONHSAT034143
Alternative gene names: XLOC_010408; linc-C13orf34-17; ENSG00000227611; RP11-168G22.3; ENSG00000227611.1; OTTHUMG00000017016.1; LINC01074;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.1017 non-coding 
CPAT coding probability 1.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01074:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL445989.1-5:1
3.1 lnc-AL445989.1-6:1
4.0 LINC01074:1
4.1 LINC01074:1
5.0 LINC01074:1
5.1 LINC01074:1
5.2 LINC01074:1