Transcript: LINC01079:1

Basic information

LNCipedia transcript ID: LINC01079:1 
HGNC Gene Symbol: LINC01079    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1079
Ensembl Gene ID: ENSG00000229609
Ensembl Transcript ID: ENST00000431171
Location (hg19): chr13:27947485-27948503
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 580 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021533; ENST00000431171; ENST00000431171.1; RP11-125I23.3-001; OTTHUMT00000044280.1; NONHSAT032653
Alternative gene names: XLOC_010324; linc-GTF3A; ENSG00000229609; RP11-125I23.3; ENSG00000229609.1; OTTHUMG00000016631.1; LINC01079;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -143.7535 non-coding 
CPAT coding probability 2.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01079:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GTF3A-1:1
3.1 lnc-GTF3A-1:1
4.0 LINC01079:1
4.1 LINC01079:1
5.0 LINC01079:1
5.1 LINC01079:1
5.2 LINC01079:1