Transcript: LINC01081:12

Basic information

LNCipedia transcript ID: LINC01081:12 
LNCipedia gene ID: LINC01081
Location (hg19): chr16:86256069-86256625
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 481 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025084; NONHSAT144184
Alternative gene names: XLOC_012044; linc-COX4NB-7; TCONS_00024764


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.8421 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01081:12 no no no no

Available literature

  1. Szafranski (2014), Two deletions overlapping a distant FOXF1 enhancer unravel the role of lncRNA LINC01081 in etiology of alveolar capillary dysplasia with misalignment of pulmonary veins., Am. J. Med. Genet. A
  2. Szafranski (2013), Small noncoding differentially methylated copy-number variants, including lncRNA genes, cause a lethal lung developmental disorder., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC092327.1-2:10
3.1 lnc-AC092327.1-2:10
4.0 LINC01081:12
4.1 LINC01081:12
5.0 LINC01081:12
5.1 LINC01081:12
5.2 LINC01081:12